kraken-master/
kraken-master/CHANGELOG
kraken-master/LICENSE
kraken-master/README.md
kraken-master/docs/
kraken-master/docs/MANUAL.html
kraken-master/docs/MANUAL.markdown
kraken-master/docs/Makefile
kraken-master/docs/bar-bg.png
kraken-master/docs/head.html
kraken-master/docs/kraken.css
kraken-master/docs/top.html
kraken-master/install_kraken.sh
kraken-master/scripts/
kraken-master/scripts/add_to_library.sh
kraken-master/scripts/build_kraken_db.sh
kraken-master/scripts/check_for_jellyfish.sh
kraken-master/scripts/clean_db.sh
kraken-master/scripts/cp_into_tempfile.pl
kraken-master/scripts/download_genomic_library.sh
kraken-master/scripts/download_taxonomy.sh
kraken-master/scripts/kraken
kraken-master/scripts/kraken-build
kraken-master/scripts/kraken-filter
kraken-master/scripts/kraken-mpa-report
kraken-master/scripts/kraken-report
kraken-master/scripts/kraken-translate
kraken-master/scripts/krakenlib.pm
kraken-master/scripts/read_merger.pl
kraken-master/scripts/report_gi_numbers.pl
kraken-master/scripts/shrink_db.sh
kraken-master/scripts/standard_installation.sh
kraken-master/scripts/upgrade_db.sh
kraken-master/scripts/verify_gi_numbers.pl
kraken-master/src/
kraken-master/src/Makefile
kraken-master/src/classify.cpp
kraken-master/src/db_shrink.cpp
kraken-master/src/db_sort.cpp
kraken-master/src/kraken_headers.hpp
kraken-master/src/krakendb.cpp
kraken-master/src/krakendb.hpp
kraken-master/src/krakenutil.cpp
kraken-master/src/krakenutil.hpp
kraken-master/src/make_seqid_to_taxid_map.cpp
kraken-master/src/quickfile.cpp
kraken-master/src/quickfile.hpp
kraken-master/src/seqreader.cpp
kraken-master/src/seqreader.hpp
kraken-master/src/set_lcas.cpp