文件名称:geneplast_1.0.0.tar
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Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.
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下载文件列表
geneplast/DESCRIPTION
geneplast/NAMESPACE
geneplast/R/
geneplast/R/AllChecks.R
geneplast/R/AllClasses.R
geneplast/R/AllContructors.R
geneplast/R/AllGenerics.R
geneplast/R/AllMethods.R
geneplast/R/AllPlots.R
geneplast/R/AllSupplements.R
geneplast/build/
geneplast/build/vignette.rds
geneplast/data/
geneplast/data/datalist
geneplast/data/gpdata.gs.RData
geneplast/inst/
geneplast/inst/CITATION
geneplast/inst/NEWS.Rd
geneplast/inst/doc/
geneplast/inst/doc/geneplast.R
geneplast/inst/doc/geneplast.Rnw
geneplast/inst/doc/geneplast.pdf
geneplast/inst/unitTests/
geneplast/inst/unitTests/test_gp.R
geneplast/man/
geneplast/man/OGP-class.Rd
geneplast/man/OGR-class.Rd
geneplast/man/geneplast-package.Rd
geneplast/man/gpdata.Rd
geneplast/man/gplast.Rd
geneplast/man/gplast.get.Rd
geneplast/man/gplast.preprocess.Rd
geneplast/man/groot.Rd
geneplast/man/groot.get.Rd
geneplast/man/groot.plot.Rd
geneplast/man/groot.preprocess.Rd
geneplast/tests/
geneplast/tests/runTests.R
geneplast/vignettes/
geneplast/vignettes/Bioc.bib
geneplast/vignettes/Fig1.pdf
geneplast/vignettes/Fig2.pdf
geneplast/vignettes/geneplast.Rnw
geneplast/NAMESPACE
geneplast/R/
geneplast/R/AllChecks.R
geneplast/R/AllClasses.R
geneplast/R/AllContructors.R
geneplast/R/AllGenerics.R
geneplast/R/AllMethods.R
geneplast/R/AllPlots.R
geneplast/R/AllSupplements.R
geneplast/build/
geneplast/build/vignette.rds
geneplast/data/
geneplast/data/datalist
geneplast/data/gpdata.gs.RData
geneplast/inst/
geneplast/inst/CITATION
geneplast/inst/NEWS.Rd
geneplast/inst/doc/
geneplast/inst/doc/geneplast.R
geneplast/inst/doc/geneplast.Rnw
geneplast/inst/doc/geneplast.pdf
geneplast/inst/unitTests/
geneplast/inst/unitTests/test_gp.R
geneplast/man/
geneplast/man/OGP-class.Rd
geneplast/man/OGR-class.Rd
geneplast/man/geneplast-package.Rd
geneplast/man/gpdata.Rd
geneplast/man/gplast.Rd
geneplast/man/gplast.get.Rd
geneplast/man/gplast.preprocess.Rd
geneplast/man/groot.Rd
geneplast/man/groot.get.Rd
geneplast/man/groot.plot.Rd
geneplast/man/groot.preprocess.Rd
geneplast/tests/
geneplast/tests/runTests.R
geneplast/vignettes/
geneplast/vignettes/Bioc.bib
geneplast/vignettes/Fig1.pdf
geneplast/vignettes/Fig2.pdf
geneplast/vignettes/geneplast.Rnw
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