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序列比对程式,主要一开始输入两串DNA序列,然后设置MATCH的值,最后算出分数-sequence alignment program, began to import store a DNA sequence, then set up MATCH value, calculate the final score
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本程序是针对多序列比对问题,提出用模拟退火算法来处理。比较好地实现了比对算法,能够得到较好的结果-proceedings against the multiple sequence alignment, proposed using simulated annealing algorithm to handle. Better than the realization of the algorithm to achieve better results
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这也是一款很好的多序列比对软件,在生物信息学的应用中很广泛-This is a very good multiple sequence alignment software, the application of bioinformatics is extensively
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blast是目前进行生物序列比对的经典软件,本书介绍了blast的基本原理。-Blast is present in biological sequence alignment of the classic software, this book introduces the basic principle of blast.
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unix,linux下编译。用于蛋白质,DNA序列比对,支持双序列或多序列比对。
-unix, linux under the compiler. For protein, DNA sequence alignment to support the dual-sequence or multiple sequence alignment right.
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多序列对齐,先用edit distance做打分矩阵,找到最相近的中心序列。然后用树状图做多序列对齐。-multiple sequence alignment, used edit distance and tree alignment。
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bowtie2的操作说明,附带详细的参数说明。bowtie是一款生物领域比对序列的重要软件-bowtie2 instructions, with a detailed descr iption of the parameters. bowtie is an important field of software a biological sequence alignment
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为了加入这个网站,我把心血分享给大家,绝对都是原创!
A:mkdatabas0.cpp 做blast前对大的非冗余NR或者是uniref数据库的预处理。为每条序列计算出等长的(长度为20*19/2=210)的数值数组。用来后期比较各个序列间的距离做准备。
B:mkdatabas.cpp 是通过比较要blast对象的那条序列和reference序列的距离,提出距离过远序列。用得到的新数据库做blast。
C:dl_fa.pl程序比较简单,但很实用,可以批量的从网站下载想要的fasta序
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