文件名称:phase.2.1.1.source.tar
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预测单倍型根据基因型数据,根据已经知道的数据,预测未知的数据- The program PHASE implements methods for estimating haplotypes from population genotype data described in
Stephens, M., and Donnelly, P. (2003). A comparison of Bayesian methods for haplotype reconstruction from population genotype data. American Journal of Human Genetics, 73:1162-1169.
Stephens, M., Smith, N., and Donnelly, P. (2001). A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978--989.
Stephens, M., and Scheet, P. (2005). Accounting for Decay of Linkage Disequilibrium in Haplotype Inference and Missing-Data Imputation. American Journal of Human Genetics, 76:449-462.
The software also incorporates methods for estimating recombination rates, and identifying recombination hotspots:
Crawford et al (2004). Evidence for substantial fine-scale variation in recombination rates across the human genome. Nature Genetics,.
The software is free for non-commercial use, and may be licensed for commercial use
Stephens, M., and Donnelly, P. (2003). A comparison of Bayesian methods for haplotype reconstruction from population genotype data. American Journal of Human Genetics, 73:1162-1169.
Stephens, M., Smith, N., and Donnelly, P. (2001). A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978--989.
Stephens, M., and Scheet, P. (2005). Accounting for Decay of Linkage Disequilibrium in Haplotype Inference and Missing-Data Imputation. American Journal of Human Genetics, 76:449-462.
The software also incorporates methods for estimating recombination rates, and identifying recombination hotspots:
Crawford et al (2004). Evidence for substantial fine-scale variation in recombination rates across the human genome. Nature Genetics,.
The software is free for non-commercial use, and may be licensed for commercial use
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下载文件列表
phase.2.1.1.source/
phase.2.1.1.source/tnt/
phase.2.1.1.source/tnt/CVS/
phase.2.1.1.source/tnt/CVS/Root
phase.2.1.1.source/tnt/CVS/Repository
phase.2.1.1.source/tnt/CVS/Entries
phase.2.1.1.source/tnt/examples/
phase.2.1.1.source/tnt/examples/CVS/
phase.2.1.1.source/tnt/examples/CVS/Root
phase.2.1.1.source/tnt/examples/CVS/Repository
phase.2.1.1.source/tnt/examples/CVS/Entries
phase.2.1.1.source/tnt/examples/A10x10.dat
phase.2.1.1.source/tnt/examples/AB10x10.dat
phase.2.1.1.source/tnt/examples/AB5x5.dat
phase.2.1.1.source/tnt/examples/SPD10x10.dat
phase.2.1.1.source/tnt/examples/ccomplex.cpp
phase.2.1.1.source/tnt/examples/cmatreg.cpp
phase.2.1.1.source/tnt/examples/ctimemm.cpp
phase.2.1.1.source/tnt/examples/ctransp.cpp
phase.2.1.1.source/tnt/examples/ctriang.cpp
phase.2.1.1.source/tnt/examples/cvec.cpp
phase.2.1.1.source/tnt/examples/fchol.cpp
phase.2.1.1.source/tnt/examples/fcomplex.cpp
phase.2.1.1.source/tnt/examples/fmatreg.cpp
phase.2.1.1.source/tnt/examples/ftimemm.cpp
phase.2.1.1.source/tnt/examples/ftransp.cpp
phase.2.1.1.source/tnt/examples/ftriang.cpp
phase.2.1.1.source/tnt/examples/fvec.cpp
phase.2.1.1.source/tnt/examples/lu.cpp
phase.2.1.1.source/tnt/examples/qr.cpp
phase.2.1.1.source/tnt/examples/tcmat.cpp
phase.2.1.1.source/tnt/examples/tfmat.cpp
phase.2.1.1.source/tnt/examples/tmult.cpp
phase.2.1.1.source/tnt/examples/tvecadaptor.cpp
phase.2.1.1.source/tnt/examples/vecinit.cpp
phase.2.1.1.source/tnt/cholesky.h
phase.2.1.1.source/tnt/cmat.h
phase.2.1.1.source/tnt/fcscmat.h
phase.2.1.1.source/tnt/fmat.h
phase.2.1.1.source/tnt/fortran.h
phase.2.1.1.source/tnt/fspvec.h
phase.2.1.1.source/tnt/index.h
phase.2.1.1.source/tnt/lapack.h
phase.2.1.1.source/tnt/lu.h
phase.2.1.1.source/tnt/qr.h
phase.2.1.1.source/tnt/region1d.h
phase.2.1.1.source/tnt/region2d.h
phase.2.1.1.source/tnt/stopwatch.h
phase.2.1.1.source/tnt/subscript.h
phase.2.1.1.source/tnt/tnt.h
phase.2.1.1.source/tnt/tntmath.h
phase.2.1.1.source/tnt/tntreqs.h
phase.2.1.1.source/tnt/transv.h
phase.2.1.1.source/tnt/triang.h
phase.2.1.1.source/tnt/trisolve.h
phase.2.1.1.source/tnt/vec.h
phase.2.1.1.source/tnt/vecadaptor.h
phase.2.1.1.source/tnt/version.h
phase.2.1.1.source/tnt/tnt.zip
phase.2.1.1.source/HapList2.cpp
phase.2.1.1.source/HapPairList.cpp
phase.2.1.1.source/Haplotype.cpp
phase.2.1.1.source/Summary.cpp
phase.2.1.1.source/arrayCC.cpp
phase.2.1.1.source/arrayDiffCount.cpp
phase.2.1.1.source/arrayDiffProb.cpp
phase.2.1.1.source/arrayDiploidDiffProb.cpp
phase.2.1.1.source/arrayFF.cpp
phase.2.1.1.source/arrayQ.cpp
phase.2.1.1.source/classpop.cpp
phase.2.1.1.source/indnode.cpp
phase.2.1.1.source/pacb.lookup.cpp
phase.2.1.1.source/phase.cpp
phase.2.1.1.source/recom.cpp
phase.2.1.1.source/utility.cpp
phase.2.1.1.source/HapList2.hpp
phase.2.1.1.source/HapPairList.hpp
phase.2.1.1.source/Haplotype.hpp
phase.2.1.1.source/Summary.hpp
phase.2.1.1.source/arrayCC.hpp
phase.2.1.1.source/arrayDiffCount.hpp
phase.2.1.1.source/arrayDiffProb.hpp
phase.2.1.1.source/arrayDiploidDiffProb.hpp
phase.2.1.1.source/arrayFF.hpp
phase.2.1.1.source/arrayQ.hpp
phase.2.1.1.source/classpop.hpp
phase.2.1.1.source/constants.hpp
phase.2.1.1.source/errcheck.hpp
phase.2.1.1.source/indnode.hpp
phase.2.1.1.source/pacb.lookup.hpp
phase.2.1.1.source/utility.hpp
phase.2.1.1.source/mt19937ar.c
phase.2.1.1.source/Makefile
phase.2.1.1.source/tnt/
phase.2.1.1.source/tnt/CVS/
phase.2.1.1.source/tnt/CVS/Root
phase.2.1.1.source/tnt/CVS/Repository
phase.2.1.1.source/tnt/CVS/Entries
phase.2.1.1.source/tnt/examples/
phase.2.1.1.source/tnt/examples/CVS/
phase.2.1.1.source/tnt/examples/CVS/Root
phase.2.1.1.source/tnt/examples/CVS/Repository
phase.2.1.1.source/tnt/examples/CVS/Entries
phase.2.1.1.source/tnt/examples/A10x10.dat
phase.2.1.1.source/tnt/examples/AB10x10.dat
phase.2.1.1.source/tnt/examples/AB5x5.dat
phase.2.1.1.source/tnt/examples/SPD10x10.dat
phase.2.1.1.source/tnt/examples/ccomplex.cpp
phase.2.1.1.source/tnt/examples/cmatreg.cpp
phase.2.1.1.source/tnt/examples/ctimemm.cpp
phase.2.1.1.source/tnt/examples/ctransp.cpp
phase.2.1.1.source/tnt/examples/ctriang.cpp
phase.2.1.1.source/tnt/examples/cvec.cpp
phase.2.1.1.source/tnt/examples/fchol.cpp
phase.2.1.1.source/tnt/examples/fcomplex.cpp
phase.2.1.1.source/tnt/examples/fmatreg.cpp
phase.2.1.1.source/tnt/examples/ftimemm.cpp
phase.2.1.1.source/tnt/examples/ftransp.cpp
phase.2.1.1.source/tnt/examples/ftriang.cpp
phase.2.1.1.source/tnt/examples/fvec.cpp
phase.2.1.1.source/tnt/examples/lu.cpp
phase.2.1.1.source/tnt/examples/qr.cpp
phase.2.1.1.source/tnt/examples/tcmat.cpp
phase.2.1.1.source/tnt/examples/tfmat.cpp
phase.2.1.1.source/tnt/examples/tmult.cpp
phase.2.1.1.source/tnt/examples/tvecadaptor.cpp
phase.2.1.1.source/tnt/examples/vecinit.cpp
phase.2.1.1.source/tnt/cholesky.h
phase.2.1.1.source/tnt/cmat.h
phase.2.1.1.source/tnt/fcscmat.h
phase.2.1.1.source/tnt/fmat.h
phase.2.1.1.source/tnt/fortran.h
phase.2.1.1.source/tnt/fspvec.h
phase.2.1.1.source/tnt/index.h
phase.2.1.1.source/tnt/lapack.h
phase.2.1.1.source/tnt/lu.h
phase.2.1.1.source/tnt/qr.h
phase.2.1.1.source/tnt/region1d.h
phase.2.1.1.source/tnt/region2d.h
phase.2.1.1.source/tnt/stopwatch.h
phase.2.1.1.source/tnt/subscript.h
phase.2.1.1.source/tnt/tnt.h
phase.2.1.1.source/tnt/tntmath.h
phase.2.1.1.source/tnt/tntreqs.h
phase.2.1.1.source/tnt/transv.h
phase.2.1.1.source/tnt/triang.h
phase.2.1.1.source/tnt/trisolve.h
phase.2.1.1.source/tnt/vec.h
phase.2.1.1.source/tnt/vecadaptor.h
phase.2.1.1.source/tnt/version.h
phase.2.1.1.source/tnt/tnt.zip
phase.2.1.1.source/HapList2.cpp
phase.2.1.1.source/HapPairList.cpp
phase.2.1.1.source/Haplotype.cpp
phase.2.1.1.source/Summary.cpp
phase.2.1.1.source/arrayCC.cpp
phase.2.1.1.source/arrayDiffCount.cpp
phase.2.1.1.source/arrayDiffProb.cpp
phase.2.1.1.source/arrayDiploidDiffProb.cpp
phase.2.1.1.source/arrayFF.cpp
phase.2.1.1.source/arrayQ.cpp
phase.2.1.1.source/classpop.cpp
phase.2.1.1.source/indnode.cpp
phase.2.1.1.source/pacb.lookup.cpp
phase.2.1.1.source/phase.cpp
phase.2.1.1.source/recom.cpp
phase.2.1.1.source/utility.cpp
phase.2.1.1.source/HapList2.hpp
phase.2.1.1.source/HapPairList.hpp
phase.2.1.1.source/Haplotype.hpp
phase.2.1.1.source/Summary.hpp
phase.2.1.1.source/arrayCC.hpp
phase.2.1.1.source/arrayDiffCount.hpp
phase.2.1.1.source/arrayDiffProb.hpp
phase.2.1.1.source/arrayDiploidDiffProb.hpp
phase.2.1.1.source/arrayFF.hpp
phase.2.1.1.source/arrayQ.hpp
phase.2.1.1.source/classpop.hpp
phase.2.1.1.source/constants.hpp
phase.2.1.1.source/errcheck.hpp
phase.2.1.1.source/indnode.hpp
phase.2.1.1.source/pacb.lookup.hpp
phase.2.1.1.source/utility.hpp
phase.2.1.1.source/mt19937ar.c
phase.2.1.1.source/Makefile
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