dox/doxygen/doxdate.bat
dox/doxygen/doxyfile.in
dox/doxygen/DoxygenFooter.html.in
dox/doxygen/DoxygenHeader.html
dox/doxygen/elastix.css
dox/doxygen/MainPage.dox.in
dox/doxygen/Modules.dox
dox/example
dox/example.bat
dox/exampleinput/fixed.mhd
dox/exampleinput/fixed.raw
dox/exampleinput/mask_fixed.mhd
dox/exampleinput/mask_fixed.raw
dox/exampleinput/mask_moving.mhd
dox/exampleinput/mask_moving.raw
dox/exampleinput/moving.mhd
dox/exampleinput/moving.raw
dox/exampleinput/parameters_Affine.txt
dox/exampleinput/parameters_BSpline.txt
dox/exampleinput/parameters_Rigid.txt
dox/exampleinput/parameters_Translation.txt
dox/exampleinput/solution_deformedmovingimage.mhd
dox/exampleinput/solution_deformedmovingimage.raw
dox/ITKCompilationOptions.txt
dox/misc/penalty.tex
dox/README.txt
src/CMakeLists.txt
src/Common/
src/Common/CMakeLists.txt
src/Common/CostFunctions/
src/Common/CostFunctions/itkAdvancedImageToImageMetric.h
src/Common/CostFunctions/itkAdvancedImageToImageMetric.hxx
src/Common/CostFunctions/itkExponentialLimiterFunction.h
src/Common/CostFunctions/itkExponentialLimiterFunction.hxx
src/Common/CostFunctions/itkHardLimiterFunction.h
src/Common/CostFunctions/itkHardLimiterFunction.hxx
src/Common/CostFunctions/itkImageToImageMetricWithFeatures.h
src/Common/CostFunctions/itkImageToImageMetricWithFeatures.txx
src/Common/CostFunctions/itkLimiterFunctionBase.h
src/Common/CostFunctions/itkMultiInputImageToImageMetricBase.h
src/Common/CostFunctions/itkMultiInputImageToImageMetricBase.txx
src/Common/CostFunctions/itkParzenWindowHistogramImageToImageMetric.h
src/Common/CostFunctions/itkParzenWindowHistogramImageToImageMetric.hxx
src/Common/CostFunctions/itkScaledSingleValuedCostFunction.cxx
src/Common/CostFunctions/itkScaledSingleValuedCostFunction.h
src/Common/CostFunctions/itkSingleValuedPointSetToPointSetMetric.h
src/Common/CostFunctions/itkSingleValuedPointSetToPointSetMetric.txx
src/Common/CostFunctions/itkTransformPenaltyTerm.h
src/Common/CostFunctions/itkTransformPenaltyTerm.txx
src/Common/elxTimer.cxx
src/Common/elxTimer.h
src/Common/ImageSamplers/
src/Common/ImageSamplers/itkImageFullSampler.h
src/Common/ImageSamplers/itkImageFullSampler.txx
src/Common/ImageSamplers/itkImageGridSampler.h
src/Common/ImageSamplers/itkImageGridSampler.txx
src/Common/ImageSamplers/itkImageRandomCoordinateSampler.h
src/Common/ImageSamplers/itkImageRandomCoordinateSampler.txx
src/Common/ImageSamplers/itkImageRandomSampler.h
src/Common/ImageSamplers/itkImageRandomSampler.txx
src/Common/ImageSamplers/itkImageRandomSamplerBase.h
src/Common/ImageSamplers/itkImageRandomSamplerSparseMask.h
src/Common/ImageSamplers/itkImageRandomSamplerSparseMask.txx
src/Common/ImageSamplers/itkImageSample.h
src/Common/ImageSamplers/itkImageSamplerBase.h
src/Common/ImageSamplers/itkImageSamplerBase.txx
src/Common/ImageSamplers/itkImageToVectorContainerFilter.h
src/Common/ImageSamplers/itkImageToVectorContainerFilter.txx
src/Common/ImageSamplers/itkMultiInputImageRandomCoordinateSampler.h
src/Common/ImageSamplers/itkMultiInputImageRandomCoordinateSampler.txx
src/Common/ImageSamplers/itkVectorContainerSource.h
src/Common/ImageSamplers/itkVectorContainerSource.txx
src/Common/ImageSamplers/itkVectorDataContainer.h
src/Common/ImageSamplers/itkVectorDataContainer.txx
src/Common/itkErodeMaskImageFilter.h
src/Common/itkErodeMaskImageFilter.txx
src/Common/itkImageFileCastWriter.h
src/Common/itkImageFileCastWriter.txx
src/Common/itkImageMaskSpatialObject2.h
src/Common/itkImageMaskSpatialObject2.txx
src/Common/itkImageSpatialObject2.h
src/Common/itkImageSpatialObject2.txx
src/Common/itkMeshFileReaderBase.h
src/Common/itkMeshFileReaderBase.txx
src/Common/itkMultiResolutionGaussianSmoothingPyramidImageFilter.h
src/Common/itkMultiResolutionGaussianSmoothingPyramidImageFilter.txx
src/Common/itkMultiResolutionImageRegistrationMethod2.h
src/Common/itkMultiResolutionImageRegistrationMethod2.txx
src/Common/itkMultiResolutionShrinkPyramidImageFilter.h
src/Common/itkMultiResolutionShrinkPyramidImageFilter.txx
src/Common/itkNDImageBase.h
src/Common/itkNDImageTemplate.h
src/Common/itkNDImageTemplate.hxx
src/Common/itkParabolicErodeDilateImageFilter.h
src/Common/itkParabolicErodeDilateImageFilter.txx
src/Common/itkParabolicErodeImageFilter.h
src/Common/itkParabolicMorphUtils.h
src/Common/itkScaledSingleValuedNonLinearOptimizer.cxx
src/Common/itkScaledSingleValuedNonLinearOptimizer.h
src/Common/itkTransformixInputPointFileReader.h
src/Common/itkTransformixInputPointFileReader.hxx
src/Common/KNN/
src/Common/KNN/ann_1.1/
src/Common/KNN/ann_1.1/CMakeLists.txt
src/Common/KNN/ann_1.1/CopyrightANN.txt
src/Common/KNN/ann_1.1/include/
src/Common/KNN/ann_1.1/include/ANN/
src/Common/KNN/ann_1.1/include/ANN/ANN.h
src/Common/KNN/ann_1.1/include/ANN/ANNperf.h
src/Common/KNN/ann_1.1/include/ANN/ANNx.h
src/Common/KNN/ann_1.1/src/
src/Common/KNN/ann_1.1/src/ANN.cpp
src/Common/KNN/ann_1.1/src/bd_fix_rad_search.cpp
src/Common/KNN/ann_1.1/src/bd_pr_search.cpp
src/Common/KNN/ann_1.1/src/bd_search.cpp
src/Common/KNN/ann_1.1/src/bd_tree.cpp
src/Common/KNN/ann_1.1/src/bd_tree.h
src/Common/KNN/ann_1.1/src/brute.cpp
src/Co