NAMD_2.8_Linux-x86/
NAMD_2.8_Linux-x86/announce.txt
NAMD_2.8_Linux-x86/charmd
NAMD_2.8_Linux-x86/license.txt
NAMD_2.8_Linux-x86/README.txt
NAMD_2.8_Linux-x86/notes.txt
NAMD_2.8_Linux-x86/flipbinpdb
NAMD_2.8_Linux-x86/namd2
NAMD_2.8_Linux-x86/lib/
NAMD_2.8_Linux-x86/lib/init.tcl
NAMD_2.8_Linux-x86/lib/replica/
NAMD_2.8_Linux-x86/lib/replica/namd_replica_server.tcl
NAMD_2.8_Linux-x86/lib/replica/README.txt
NAMD_2.8_Linux-x86/lib/replica/show_replicas.vmd
NAMD_2.8_Linux-x86/lib/replica/spawn_namd.tcl
NAMD_2.8_Linux-x86/lib/replica/replica_exchange.tcl
NAMD_2.8_Linux-x86/lib/replica/clone_reps.vmd
NAMD_2.8_Linux-x86/lib/replica/example/
NAMD_2.8_Linux-x86/lib/replica/example/unfolded.pdb
NAMD_2.8_Linux-x86/lib/replica/example/alanin.pdb
NAMD_2.8_Linux-x86/lib/replica/example/alanin.params
NAMD_2.8_Linux-x86/lib/replica/example/restart_1.conf
NAMD_2.8_Linux-x86/lib/replica/example/alanin.psf
NAMD_2.8_Linux-x86/lib/replica/example/load_all.vmd
NAMD_2.8_Linux-x86/lib/replica/example/fold_alanin.conf
NAMD_2.8_Linux-x86/lib/replica/example/alanin_base.namd
NAMD_2.8_Linux-x86/lib/colvars/
NAMD_2.8_Linux-x86/lib/colvars/colvarproxy_standalone.C
NAMD_2.8_Linux-x86/lib/colvars/colvarproxy_standalone.h
NAMD_2.8_Linux-x86/lib/abf/
NAMD_2.8_Linux-x86/lib/abf/abf_script.tcl
NAMD_2.8_Linux-x86/lib/abf/abscissa.tcl
NAMD_2.8_Linux-x86/lib/abf/zCoord-1atom.tcl
NAMD_2.8_Linux-x86/lib/abf/xyDistance.tcl
NAMD_2.8_Linux-x86/lib/abf/zCoord.tcl
NAMD_2.8_Linux-x86/lib/abf/pkgIndex.tcl
NAMD_2.8_Linux-x86/lib/abf/distance.tcl
NAMD_2.8_Linux-x86/lib/abf/abf.tcl
NAMD_2.8_Linux-x86/lib/abf/vectors.tcl
NAMD_2.8_Linux-x86/lib/abf/distance-com.tcl
NAMD_2.8_Linux-x86/lib/ramd/
NAMD_2.8_Linux-x86/lib/ramd/scripts/
NAMD_2.8_Linux-x86/lib/ramd/scripts/ramd-4.1_script.tcl
NAMD_2.8_Linux-x86/lib/ramd/scripts/ramd-4.1.tcl
NAMD_2.8_Linux-x86/lib/ramd/scripts/vectors.tcl
NAMD_2.8_Linux-x86/lib/ramd/README
NAMD_2.8_Linux-x86/lib/ramd/examples/
NAMD_2.8_Linux-x86/lib/ramd/examples/example_ramd_output/
NAMD_2.8_Linux-x86/lib/ramd/examples/example_ramd_output/example_ramd.namdout
NAMD_2.8_Linux-x86/lib/ramd/examples/example_ramd-md_output/
NAMD_2.8_Linux-x86/lib/ramd/examples/example_ramd-md_output/example_ramd-md.namdout
NAMD_2.8_Linux-x86/lib/ramd/examples/run_ramd_example.sh
NAMD_2.8_Linux-x86/lib/ramd/examples/README.examples
NAMD_2.8_Linux-x86/lib/ramd/examples/run_ramd-md_example.sh
NAMD_2.8_Linux-x86/lib/abf_integrate/
NAMD_2.8_Linux-x86/lib/abf_integrate/abf_data.h
NAMD_2.8_Linux-x86/lib/abf_integrate/abf_integrate.cpp
NAMD_2.8_Linux-x86/lib/abf_integrate/abf_data.cpp
NAMD_2.8_Linux-x86/flipdcd
NAMD_2.8_Linux-x86/charmd_faceless
NAMD_2.8_Linux-x86/psfgen
NAMD_2.8_Linux-x86/charmrun