autodock/aclocal.m4
autodock/AD4.1_bound.dat
autodock/AD4.1_compact.dat
autodock/AD4.1_extended.dat
autodock/AD4_parameters.dat
autodock/AD4_PARM99.dat
autodock/alea.cc
autodock/alea.h
autodock/analysis.cc
autodock/analysis.h
autodock/atom_parameter_manager.cc
autodock/atom_parameter_manager.h
autodock/AUTHORS
autodock/autocomm.h
autodock/autodock3.1
autodock/autoglobal.h
autodock/autom4te.cache/output.0
autodock/autom4te.cache/output.1
autodock/autom4te.cache/output.2
autodock/autom4te.cache/requests
autodock/autom4te.cache/traces.0
autodock/autom4te.cache/traces.1
autodock/autom4te.cache/traces.2
autodock/banner.cc
autodock/banner.h
autodock/bestpdb.cc
autodock/bestpdb.h
autodock/calculateEnergies.cc
autodock/calculateEnergies.h
autodock/call_cpso.cc
autodock/call_cpso.h
autodock/call_glss.cc
autodock/call_glss.h
autodock/call_gs.cc
autodock/call_gs.h
autodock/call_ls.cc
autodock/call_ls.h
autodock/ChangeLog
autodock/changeState.cc
autodock/changeState.h
autodock/check_header_float.cc
autodock/check_header_float.h
autodock/check_header_int.cc
autodock/check_header_int.h
autodock/check_header_line.cc
autodock/check_header_line.h
autodock/clmode.cc
autodock/clmode.h
autodock/cluster_analysis.cc
autodock/cluster_analysis.h
autodock/cnv_state_to_coords.cc
autodock/cnv_state_to_coords.h
autodock/coliny.cc
autodock/coliny.h
autodock/com.cc
autodock/config.guess
autodock/config.sub
autodock/configure
autodock/configure-universalDarwin
autodock/configure.ac
autodock/config_acro
autodock/conformation_sampler.cc
autodock/conformation_sampler.h
autodock/constants.h
autodock/COPYING
autodock/depcomp
autodock/dimLibrary.cc
autodock/dimLibrary.h
autodock/distdepdiel.cc
autodock/distdepdiel.h
autodock/dpftoken.h
autodock/eintcal.cc
autodock/eintcal.h
autodock/eintcalPrint.cc
autodock/eintcalPrint.h
autodock/energy.h
autodock/eval.cc
autodock/eval.h
autodock/gencau.cc
autodock/gencau.h
autodock/getInitialState.cc
autodock/getInitialState.h
autodock/getpdbcrds.cc
autodock/getpdbcrds.h
autodock/getrms.cc
autodock/getrms.h
autodock/get_atom_type.cc
autodock/get_atom_type.h
autodock/globals.h
autodock/grid.h
autodock/gs.cc
autodock/gs.h
autodock/hybrids.h
autodock/initautodock.cc
autodock/initautodock.h
autodock/input_state.cc
autodock/input_state.h
autodock/INSTALL
autodock/install-sh
autodock/intnbtable.cc
autodock/intnbtable.h
autodock/investigate.cc
autodock/investigate.h
autodock/linpack.cc
autodock/ls.cc
autodock/ls.h
autodock/main.cc
autodock/main.h
autodock/Makefile.am
autodock/Makefile.in
autodock/Makefile.pre-autoconf
autodock/mapping.cc
autodock/map_declare.h
autodock/mdist.h
autodock/minmeanmax.cc
autodock/missing
autodock/mkdistbins
autodock/mkdisttars
autodock/mkNewState.cc
autodock/mkNewState.h
autodock/mkRandomState.cc
autodock/mkRandomState.h
autodock/mkTorTree.cc
autodock/mkTorTree.h
autodock/molstruct.h
autodock/nbe.cc
autodock/nbe.h
autodock/NEWS
autodock/nonbonds.cc
autodock/nonbonds.h
autodock/NOTES_xml.txt
autodock/openfile.cc
autodock/openfile.h
autodock/output_state.cc
autodock/output_state.h
autodock/paramdat2h.csh
autodock/parameters.h
autodock/parsetypes.cc
autodock/parsetypes.h
autodock/parse_dpf_line.cc
autodock/parse_dpf_line.h
autodock/parse_param_line.cc
autodock/parse_param_line.h
autodock/parse_PDBQT_line.cc
autodock/parse_PDBQT_line.h
autodock/parse_trj_line.cc
autodock/parse_trj_line.h
autodock/partokens.h
autodock/PDBQT_tokens.h
autodock/prClusterHist.cc
autodock/prClusterHist.h
autodock/prInitialState.cc
autodock/prInitialState.h
autodock/printdate.cc
autodock/printdate.h
autodock/printEnergies.cc
autodock/printEnergies.h
autodock/printhms.cc
autodock/printhms.h
autodock/print_2x.cc
autodock/print_2x.h
autodock/print_atomic_energies.cc
autodock/print_atomic_energies.h
autodock/print_avsfld.cc
autodock/print_avsfld.h
autodock/print_rem.cc
autodock/print_rem.h
autodock/prTorConList.cc
autodock/prTorConList.h
autodock/qmultiply.cc
autodock/qmultiply.h
autodock/qtransform.cc
autodock/qtransform.h
autodock/quicksort.cc
autodock/quicksort.h
autodock/ranlib.cc
autodock/ranlib.h
autodock/readfield.cc
autodock/readfield.h
autodock/readGridMap.cc
autodock/readmap.cc
autodock/readmap.h
autodock/README
autodock/readPDBQT.cc
autodock/readPDBQT.h
autodock/read_parameter_library.cc
autodock/read_parameter_library.h
autodock/RELEASENOTES
autodock/rep.cc
autodock/rep.h
autodock/rep_constants.h
autodock/scauchy.cc
autodock/setflags.cc
autodock/setflags.h
autodock/simanneal.cc
autodock/simanneal.h
autodock/sort_enrg.cc
autodock/sort_enrg.h
autodock/stack.cc
autodock/stack.h
autodock/stateLibrary.cc
autodock/stateLibrary.h
autodock/stop.cc
autodock/stop.h
autodock/strindex.cc
autodock/strindex.h
autodock/structs.h
autodock/success.cc
autodock/success.h
autodock/support.cc
autodock/support.h
autodock/swap.cc
autodock/swap.h
autodock/Tests/1pgp.dpf
autodock/Tests/1pgp.dpf.dpf
autodock/Tests/1pgp.fpd
autodock/Tests/1pgp.gpf
autodock/Tests/1pgp_ga_select_tournament.dpf
autodock/Tests/1pgp_illegal_keyword.dpf
autodock/Tests/1pgp_just_right_number_torsions.dpf
autodock/Tests/1pgp_lig.pdbqt
autodock/Tests/1pgp_lig2.pdbqt
autodock/