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dox/createWebsite
dox/doxygen/doxdate.bat
dox/doxygen/doxyfile.in
dox/doxygen/DoxygenFooter.html.in
dox/doxygen/DoxygenHeader.html
dox/doxygen/elastix.css
dox/doxygen/MainPage.dox.in
dox/doxygen/Modules.dox
dox/example
dox/example.bat
dox/exampleinput/fixed.mhd
dox/exampleinput/fixed.raw
dox/exampleinput/mask_fixed.mhd
dox/exampleinput/mask_fixed.raw
dox/exampleinput/mask_moving.mhd
dox/exampleinput/mask_moving.raw
dox/exampleinput/moving.mhd
dox/exampleinput/moving.raw
dox/exampleinput/parameters_Affine.txt
dox/exampleinput/parameters_BSpline.txt
dox/exampleinput/parameters_Rigid.txt
dox/exampleinput/parameters_Translation.txt
dox/exampleinput/solution_deformedmovingimage.mhd
dox/exampleinput/solution_deformedmovingimage.raw
dox/ITKCompilationOptions.txt
dox/manual/images/a320.eps
dox/manual/images/a3200.eps
dox/manual/images/a32000.eps
dox/manual/images/ak.eps
dox/manual/images/bs2.eps
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dox/manual/images/elastixLogo.eps
dox/manual/images/fixed.eps
dox/manual/images/gd_example.eps
dox/manual/images/ImageOriginAndSpacing.eps
dox/manual/images/ImageOriginAndSpacing.fig
dox/manual/images/ImageRegistrationConcept.eps
dox/manual/images/ImageRegistrationConcept.fig
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dox/manual/images/makefigtransformexample/im/fixed_t1.mhd
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dox/manual/images/makefigtransformexample/im/moving_pd.mhd
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dox/manual/images/nn.eps
dox/manual/images/optimisationexamples.ppt
dox/manual/images/registrationcomponents.eps
dox/manual/images/registrationcomponents.fig
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dox/manual/manual.bib
dox/manual/manual.tex
dox/misc/penalty.tex
dox/README.txt
src/CMakeLists.txt
src/Common/CMakeLists.txt
src/Common/CostFunctions/itkAdvancedImageToImageMetric.h
src/Common/CostFunctions/itkAdvancedImageToImageMetric.hxx
src/Common/CostFunctions/itkExponentialLimiterFunction.h
src/Common/CostFunctions/itkExponentialLimiterFunction.hxx
src/Common/CostFunctions/itkHardLimiterFunction.h
src/Common/CostFunctions/itkHardLimiterFunction.hxx
src/Common/CostFunctions/itkImageToImageMetricWithFeatures.h
src/Common/CostFunctions/itkImageToImageMetricWithFeatures.txx
src/Common/CostFunctions/itkLimiterFunctionBase.h
src/Common/CostFunctions/itkMultiInputImageToImageMetricBase.h
src/Common/CostFunctions/itkMultiInputImageToImageMetricBase.txx
src/Common/CostFunctions/itkParzenWindowHistogramImageToImageMetric.h
src/Common/CostFunctions/itkParzenWindowHistogramImageToImageMetric.hxx
src/Common/CostFunctions/itkScaledSingleValuedCostFunction.cxx
src/Common/CostFunctions/itkScaledSingleValuedCostFunction.h
src/Common/CostFunctions/itkSingleValuedPointSetToPointSetMetric.h
src/Common/CostFunctions/itkSingleValuedPointSetToPointSetMetric.txx
src/Common/CostFunctions/itkTransformPenaltyTerm.h
src/Common/CostFunctions/itkTransformPenaltyTerm.txx
src/Common/CUDA/CI/cubicPrefilter3D.cu
src/Common/CUDA/CI/cubicTex3D.cu
src/Common/CUDA/CI/internal/bspline_kernel.cu
src/Common/CUDA/CI/internal/cubicPrefilter_kernel.cu
src/Common/CUDA/CI/internal/cubicTex3D_kernel.cu
src/Common/CUDA/CI/internal/cutil_math_bugfixes.h
src/Common/CUDA/CI/internal/math_func.cu
src/Common/CUDA/CI/internal/version.cu
src/Common/CUDA/CMakeLists.txt
src/Common/CUDA/cudaDeformationsKernel.cu
src/Common/CUDA/cudaInlineFunctions.h
src/Common/CUDA/cudaMacro.h
src/Common/CUDA/cudaResampleImageFilter.cu
src/Common/CUDA/cudaResampleImageFilter.cuh
src/Common/elxTimer.cxx
src/Common/elxTimer.h
src/Common/ImageSamplers/itkImageFullSampler.h
src/Common/ImageSamplers/itkImageFullSampler.txx
src/Common/ImageSamplers/itkImageGridSampler.