CUDA_BLASTP/
CUDA_BLASTP/Makefile
CUDA_BLASTP/data/
CUDA_BLASTP/data/BLOSUM62
CUDA_BLASTP/data/DB_Sorting
CUDA_BLASTP/CUDA_Blast_kernel.cu
CUDA_BLASTP/include/
CUDA_BLASTP/include/gappedExtension.h
CUDA_BLASTP/include/smithWatermanScoring.h
CUDA_BLASTP/include/PSSMatrix.h
CUDA_BLASTP/include/parameters.h
CUDA_BLASTP/include/semiGappedScoring.h
CUDA_BLASTP/include/seg.h
CUDA_BLASTP/include/writedb.h
CUDA_BLASTP/include/oldSemiGappedScoring.h
CUDA_BLASTP/include/memBlocks.h
CUDA_BLASTP/include/scoreMatrix.h
CUDA_BLASTP/include/karlin.h
CUDA_BLASTP/include/global.h
CUDA_BLASTP/include/CUDA-hitMatrix.h
CUDA_BLASTP/include/fasterGappedExtension.h
CUDA_BLASTP/include/print.h
CUDA_BLASTP/include/genwin.h
CUDA_BLASTP/include/unpack.h
CUDA_BLASTP/include/qPosList.h
CUDA_BLASTP/include/CUDA-DFA.h
CUDA_BLASTP/include/postings.h
CUDA_BLASTP/include/CUDA-ungappedExtension.h
CUDA_BLASTP/include/sequential_alignments.h
CUDA_BLASTP/include/encoding.h
CUDA_BLASTP/include/lnfac.h
CUDA_BLASTP/include/readFasta.h
CUDA_BLASTP/include/readFile.h
CUDA_BLASTP/include/statistics.h
CUDA_BLASTP/include/CUDA-search.h
CUDA_BLASTP/include/index.h
CUDA_BLASTP/include/smithWatermanTraceback.h
CUDA_BLASTP/include/wildcards.h
CUDA_BLASTP/include/readdb.h
CUDA_BLASTP/include/oldGappedScoring.h
CUDA_BLASTP/include/memSingleBlock.h
CUDA_BLASTP/include/CUDA-BLASTP.h
CUDA_BLASTP/include/descriptions.h
CUDA_BLASTP/include/gappedScoring.h
CUDA_BLASTP/readme
CUDA_BLASTP/obj/
CUDA_BLASTP/obj/emurelease/
CUDA_BLASTP/obj/debug/
CUDA_BLASTP/obj/release/
CUDA_BLASTP/obj/x86_64/
CUDA_BLASTP/obj/x86_64/release/
CUDA_BLASTP/obj/emudebug/
CUDA_BLASTP/CUDA_Blast.cu
CUDA_BLASTP/src/
CUDA_BLASTP/src/memBlocks.c
CUDA_BLASTP/src/smithWatermanTraceback.c
CUDA_BLASTP/src/descriptions.c
CUDA_BLASTP/src/wildcards.c
CUDA_BLASTP/src/writedb.c
CUDA_BLASTP/src/CUDA-BLASTP.c
CUDA_BLASTP/src/index.c
CUDA_BLASTP/src/CUDA-formatdb.c
CUDA_BLASTP/src/readdb.c
CUDA_BLASTP/src/CUDA-DFA.c
CUDA_BLASTP/src/postings.c
CUDA_BLASTP/src/fasterGappedExtension.c
CUDA_BLASTP/src/encoding.c
CUDA_BLASTP/src/semiGappedScoring.c
CUDA_BLASTP/src/memSingleBlock.c
CUDA_BLASTP/src/readFasta.c
CUDA_BLASTP/src/parameters.c
CUDA_BLASTP/src/unpack.c
CUDA_BLASTP/src/CUDA-search.c
CUDA_BLASTP/src/gappedScoring.c
CUDA_BLASTP/src/oldSemiGappedScoring.c
CUDA_BLASTP/src/scoreMatrix.c
CUDA_BLASTP/src/statistics.c
CUDA_BLASTP/src/readFile.c
CUDA_BLASTP/src/global.c
CUDA_BLASTP/src/print.c
CUDA_BLASTP/src/CUDA-hitMatrix.c
CUDA_BLASTP/src/genwin.c
CUDA_BLASTP/src/PSSMatrix.c
CUDA_BLASTP/src/karlin.c
CUDA_BLASTP/src/smithWatermanScoring.c
CUDA_BLASTP/src/gappedExtension.c
CUDA_BLASTP/src/oldGappedScoring.c
CUDA_BLASTP/src/qPosList.c
CUDA_BLASTP/src/seg.c
CUDA_BLASTP/src/CUDA-ungappedExtension.c
CUDA_BLASTP/src/sequential_alignments.c