extras/binLinkageData.m
extras/checkSubArrayPosition.m
extras/chromosomeGUI.fig
extras/chromosomeGUI.m
extras/correlateQtoAProfiles.m
extras/createPermutedSets.m
extras/DispHeatMapsLegend.tif
extras/DisplayHeatmaps.fig
extras/DisplayHeatmaps.m
extras/extractLinkagePlotsA.m
extras/extractLinkagePlotsQ.m
extras/findString.m
extras/getDistancesA.m
extras/getDistancesQ.m
extras/linkageGUI.fig
extras/linkageGUI.m
extras/linkageSDscatter.m
extras/makeLinkageMap.m
extras/makeSquare.m
extras/mergeScoreMatHorz.m
extras/mergeScoreMatVert.m
extras/permuteArrayMap.m
extras/plotALinkageProfile.m
extras/plotQLinkageProfile.m
extras/removeColsByIndex.m
extras/removeRowsByIndex.m
extras/reorderAbyCoordinate.m
extras/reorderCoords.m
extras/reorderQbyCoordinate.m
extras/scatterQACorrelations.m
extras/surfGUI.fig
extras/surfGUI.m
extras/to_plate.m
get/data2plate.asv
get/data2plate.m
get/getGeneName.asv
get/getGeneName.m
get/getGeneNum.m
get/getGeneNums.m
get/getInteraction.asv
get/getInteraction.m
get/getOrfName.m
get/getOrfNameOld.m
get/getOrfNum.asv
get/getOrfNum.m
get/index2col.m
get/index2row.m
get/path2filename.m
get/plate2data.asv
get/plate2data.m
math/dfdp.m
math/dfdp2.m
math/div.m
math/function equations/
math/function equations/gaussian.m
math/function equations/gaussianStand.m
math/function equations/myTpdf.m
math/function equations/splineFitFunc.m
math/function equations/tdistForFitting.m
math/function equations/tpdfInt.m
math/leasqr.m
math/leasqr2.m
math/linearInterp.m
math/middleMean.m
math/mod.m
math/myNanCorrcoef.asv
math/myNanCorrcoef.m
math/myNanCosine.m
math/myNanMean.asv
math/myNanMean.m
math/myNanMedian.m
math/myNanSD.asv
math/myNanSD.m
math/myNanSpearman.m
math/myNanVar.asv
math/myNanVar.m
math/nan25percentile.m
math/nan75percentile.m
math/nanMiddleMean.m
math/pav.m
math/sigmoid.m
math/smooth.m
math/splinefit.m
plot/computeRowScatterUsingNames.asv
plot/computeRowScatterUsingNames.m
plot/dscatter.asv
plot/dscatter.m
plot/imageMeanSizes.m
plot/imagescnan.m
plot/imagescnan_license.txt
plot/imageScores.m
plot/plotConfidenceCurve.m
plot/plotEstimatedPartnerScores.m
plot/plotScoresByChromCoord.asv
plot/plotScoresByChromCoord.m
plot/scatterAllReplicates.asv
plot/scatterAllReplicates.m
plot/scatterBiologicalReplicates.asv
plot/scatterBiologicalReplicates.m
plot/scatterDataWithNames.asv
plot/scatterDataWithNames.m
plot/scatterSet1vsSet2.asv
plot/scatterSet1vsSet2.m
plot/viewDataImageOnPlate.m
process/applyRowAndColumColSizeCorrections.m
process/computeAveragedScores.asv
process/computeAveragedScores.m
process/computeAveragedScoresMulti.asv
process/computeAveragedScoresMulti.m
process/computeCOPscores.m
process/computeErrorEstimates.asv
process/computeErrorEstimates.m
process/computeScores.asv
process/computeScores.m
process/computeScoresByBatch.asv
process/computeScoresByBatch.m
process/correctRawForAgarCurvature.asv
process/correctRawForAgarCurvature.m
process/filterAndNormalize.asv
process/filterAndNormalize.m
process/filterColoniesWithMissingNeighbors.asv
process/filterColoniesWithMissingNeighbors.m
process/findPlateAdjustments.asv
process/findPlateAdjustments.m
process/normalizeColonySizes.m
process/normalizeColonySizes2.asv
process/normalizeColonySizes2.m
process/normalizeColonySizes3.asv
process/normalizeColonySizes3.m
process/pruneScoreMatrix.m
process/rawRemoveByIndex.asv
process/rawRemoveByIndex.m
process/reformatData.asv
process/reformatData.m
process/renameRowlabels2Orfnames.asv
process/renameRowlabels2Orfnames.m
process/scorematRemoveStrainsByIndex.m
process/scoreS.m
process/scoreS_matrix.asv
process/scoreS_matrix.m
process/setLinkageScoresToNaN.m
process/setLinkageScoresToNaN_new.asv
process/sigmoidalCOP1.m
process/surf_correct_assen.m
read/getNextChunkOfLines.m
read/readAllLines.m
read/readColonySizes.asv
read/readColonySizes.m
read/readCoordinateMap.asv
read/readCoordinateMap.m
read/readGeneNames.asv
read/readGeneNames.m
read/readOrfCoordinates.asv
read/readOrfCoordinates.m
read/readScreen.asv
read/readScreen.m
read/readScreenNamingMap.m
read/unionrawdata.asv
read/unionrawdata.m
sample files/ESP1 coordinate map.txt
sample files/ESP1 dat files/
sample files/ESP1 dat files/YAL007C_a.dat
sample files/ESP1 dat files/YAL007C_b.dat
sample files/ESP1 dat files/YAL007C_c.dat
sample files/ESP1 dat files/YAL023C_a.dat
sample files/ESP1 dat files/YAL023C_b.dat
sample files/ESP1 dat files/YAL023C_c.dat
sample files/ESP1 dat files/YAL026C_a.dat
sample files/ESP1 dat files/YAL026C_b.dat
sample files/ESP1 dat files/YAL026C_c.dat
sample files/ESP1 dat files/YAL042W-1_a.dat
sample files/ESP1 dat files/YAL042W-1_b.dat
sample files/ESP1 dat files/YAL042W-1_c.dat
sample files/ESP1 dat files/YAL042W-2_a.dat
sample files/ESP1 dat files/YAL042W-2_b.dat
sample files/ESP1 dat files/YAL042W-2_c.dat
sample files/ESP1 dat files/YAL058W_a.dat
sample files/ESP1 dat files/YAL058W_b.dat
sample files/ESP1 dat files/YAL058W_c.dat
sample files/ESP1 dat files/YAR002C-A_a.dat
sample files/ESP1 dat files/YAR002C-A_b.dat
sample files/ESP1 dat files/YAR002C-A_c.dat
sample files/ESP1 dat files/YAR042W-1_a.dat
sample files/ESP1 dat files/YAR042W-1_b.dat
samp