basic_demon_example.m
compile_c_files.m
functions/backwards2forwards.m
functions/backwards2forwards_2d_double.c
functions/backwards2forwards_2d_double.m
functions/backwards2forwards_3d_double.c
functions/backwards2forwards_3d_single.c
functions/demons_energy.m
functions/fminlbfgs.m
functions/imgaussian.m
functions/imresize3d.m
functions/MutualTransform.m
functions/mutual_histogram_double.c
functions/mutual_histogram_double.m
functions/mutual_histogram_single.c
functions/mutual_transform_2d_double.asv
functions/mutual_transform_2d_double.c
functions/mutual_transform_2d_double.m
functions/mutual_transform_3d_double.asv
functions/mutual_transform_3d_double.c
functions/mutual_transform_3d_single.asv
functions/mutual_transform_3d_single.c
functions/showcs3.fig
functions/showcs3.m
functions/store_transf.m
functions/strain.m
functions_affine/affine_error_3d_double.c
functions_affine/affine_error_3d_single.c
functions_affine/affine_registration_error.m
functions_affine/affine_registration_image.m
functions_affine/affine_transform.m
functions_affine/affine_transform_2d_double.c
functions_affine/affine_transform_2d_double.m
functions_affine/affine_transform_3d_double.c
functions_affine/affine_transform_3d_single.c
functions_affine/image_difference.m
functions_affine/image_interpolation.c
functions_affine/image_interpolation.h
functions_affine/make_transformation_matrix.m
functions_affine/squared_difference_double.c
functions_affine/squared_difference_double.m
functions_affine/squared_difference_single.c
functions_nonrigid/image_interpolation.c
functions_nonrigid/image_interpolation.h
functions_nonrigid/movepixels.m
functions_nonrigid/movepixels_2d_double.c
functions_nonrigid/movepixels_2d_double.m
functions_nonrigid/movepixels_3d_double.c
functions_nonrigid/movepixels_3d_single.c
images/brain_FA.png
images/brain_FLAIR.png
images/brain_MD.png
images/brain_T1.png
images/brain_T1_wave.png
images/brain_T2.png
images/brain_T2_wave.png
images/checkboard2.png
images/checkboard3.png
images/checkboard4.png
images/get_example_data.m
images/lenag1.png
images/lenag2.png
images/lenag3.png
images/modtest1.png
images/modtest2.png
images/modtest3.png
images/wave_field.mat
literature/Kroon_Paper_Boston.pdf
literature/Kroon_Poster_Boston.pdf
register_images.m
register_volumes.m
license.txt