Searching for shared motif between strings in C-

Searching for shared motif between strings in C



Amir Mohammad Nasrollahi, 30 Jan 2015 CPOL



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In this article, i consider the problem of identifying motifs in the biological sequence data sets. To solve this task, i present a new algorithm for finding patterns that just use <String.h> library in C compiler and a new way to avoid using arrays search.

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Introduction

In this article, i consider the problem of identifying motifs in the biological sequence data sets. To solve this task, i present a new algorithm for finding patterns that just use <String.h> library in C compiler and a new way to avoid using arrays search.



Background

Finding motifs or repeated patterns in data is of wide scientific interest with many applications in genomic and proteomic analysis. The motif search problem abstracts many important problems in analysis of sequence data, where motifs are, for ins