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文件名称:deepbind

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  • 上传时间:
    2016-12-07
  • 文件大小:
    24.75mb
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DeepBind可以分析嘈杂的实验数据来确定一组的DNA和RNA序列的蛋白质将绑定。 然后,它可以看看一个新的序列,计算可能性有多大,这些蛋白质绑定到它。 给定一个序列突变,该工具可以分析是否绑定更改。 蛋白质结合位点突变,添加或删除可以改变基因表达模式和导致疾病。

-DeepBind can analyze noisy experimental data to determine a set of DNA and RNA sequences to which the protein will bind. Then it can look at a new sequence, calculating how likely it is that these proteins are bound to it. Given a sequence mutation, the tool can analyze whether a binding change is made. Protein-binding site mutations, additions or deletions can alter gene expression patterns and cause disease.
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下载文件列表

code/Backup/deepbind_scripts.sln
code/Backup/deepbind_scripts.v11.suo
code/cfg/classification/M1.cfg
code/cfg/classification/M2.cfg
code/cfg/regression/allpool/M1.cfg
code/cfg/regression/allpool/M2.cfg
code/cfg/regression/maxpool/M1.cfg
code/cfg/regression/maxpool/M2.cfg
code/cfg/trainers/default.cfg
code/cfg/trainers/quick.cfg
code/deepbind_scripts.pyproj
code/deepbind_scripts.sln
code/deepbind_scripts.v11.suo
code/deepbind_train_dream5.py
code/deepbind_train_encode.py
code/deepbind_train_rnac.py
code/deepbind_train_selex.py
code/deepbind_util.py
code/deepbind_util.pyc
code/deepfind.py
code/libs/deepity/build/release/bin/libdeepity_smat.so
code/libs/deepity/build/release/obj/DEEPITY_SMAT/blockwise_dot.d
code/libs/deepity/build/release/obj/DEEPITY_SMAT/blockwise_dot.o
code/libs/deepity/build/release/obj/DEEPITY_SMAT/deepity_smat.d
code/libs/deepity/build/release/obj/DEEPITY_SMAT/deepity_smat.o
code/libs/deepity/build/release/obj/DEEPITY_SMAT/dropout.d
code/libs/deepity/build/release/obj/DEEPITY_SMAT/dropout.o
code/libs/deepity/build/release/obj/DEEPITY_SMAT/gradstep.d
code/libs/deepity/build/release/obj/DEEPITY_SMAT/gradstep.o
code/libs/deepity/build/release/obj/DEEPITY_SMAT/madd_bcast.d
code/libs/deepity/build/release/obj/DEEPITY_SMAT/madd_bcast.o
code/libs/deepity/build/release/obj/DEEPITY_SMAT/maskout.d
code/libs/deepity/build/release/obj/DEEPITY_SMAT/maskout.o
code/libs/deepity/deepity/arial.ttf
code/libs/deepity/deepity/arialbd.ttf
code/libs/deepity/deepity/cour.ttf
code/libs/deepity/deepity/data.py
code/libs/deepity/deepity/data.pyc
code/libs/deepity/deepity/dumpviz.py
code/libs/deepity/deepity/globals.py
code/libs/deepity/deepity/globals.pyc
code/libs/deepity/deepity/gradcheck.py
code/libs/deepity/deepity/gradcheck.pyc
code/libs/deepity/deepity/hpsearch.py
code/libs/deepity/deepity/hpsearch.pyc
code/libs/deepity/deepity/hypertrain.py
code/libs/deepity/deepity/hypertrain.pyc
code/libs/deepity/deepity/node.py
code/libs/deepity/deepity/node.pyc
code/libs/deepity/deepity/plug.py
code/libs/deepity/deepity/plug.pyc
code/libs/deepity/deepity/report.py
code/libs/deepity/deepity/report.pyc
code/libs/deepity/deepity/report_plotter.py
code/libs/deepity/deepity/sgd.py
code/libs/deepity/deepity/sgd.pyc
code/libs/deepity/deepity/std/chain.py
code/libs/deepity/deepity/std/chain.pyc
code/libs/deepity/deepity/std/elemwise.py
code/libs/deepity/deepity/std/elemwise.pyc
code/libs/deepity/deepity/std/full.py
code/libs/deepity/deepity/std/full.pyc
code/libs/deepity/deepity/std/loss.py
code/libs/deepity/deepity/std/loss.pyc
code/libs/deepity/deepity/std/softmax.py
code/libs/deepity/deepity/std/softmax.pyc
code/libs/deepity/deepity/std/trainable.py
code/libs/deepity/deepity/std/trainable.pyc
code/libs/deepity/deepity/std/__init__.py
code/libs/deepity/deepity/std/__init__.pyc
code/libs/deepity/deepity/tape2logo.py
code/libs/deepity/deepity/tape2logo.pyc
code/libs/deepity/deepity/trainer.py
code/libs/deepity/deepity/trainer.pyc
code/libs/deepity/deepity/util.py
code/libs/deepity/deepity/util.pyc
code/libs/deepity/deepity/_ext/deepity_smat.py
code/libs/deepity/deepity/_ext/deepity_smat.pyc
code/libs/deepity/deepity/_ext/__init__.py
code/libs/deepity/deepity/_ext/__init__.pyc
code/libs/deepity/deepity/_io_/load.py
code/libs/deepity/deepity/_io_/load.pyc
code/libs/deepity/deepity/_io_/pydot.py
code/libs/deepity/deepity/_io_/pydot.pyc
code/libs/deepity/deepity/_io_/write_svg.py
code/libs/deepity/deepity/_io_/write_svg.pyc
code/libs/deepity/deepity/_io_/__init__.py
code/libs/deepity/deepity/_io_/__init__.pyc
code/libs/deepity/deepity/_lockfile/linklockfile.py
code/libs/deepity/deepity/_lockfile/mkdirlockfile.py
code/libs/deepity/deepity/_lockfile/pidlockfile.py
code/libs/deepity/deepity/_lockfile/sqlitelockfile.py
code/libs/deepity/deepity/_lockfile/__init__.py
code/libs/deepity/deepity/__init__.py
code/libs/deepity/deepity/__init__.pyc
code/libs/deepity/deepity_smat/blockwise_dot.cu
code/libs/deepity/deepity_smat/deepity_smat.cpp
code/libs/deepity/deepity_smat/dropout.cu
code/libs/deepity/deepity_smat/gradstep.cu
code/libs/deepity/deepity_smat/madd_bcast.cu
code/libs/deepity/deepity_smat/makefile
code/libs/deepity/deepity_smat/maskout.cu
code/libs/deepity/vcproj/Backup/deepity.sln
code/libs/deepity/vcproj/Backup/deepity.v11.suo
code/libs/deepity/vcproj/deepity.pyperf
code/libs/deepity/vcproj/deepity.pyproj
code/libs/deepity/vcproj/deepity.sdf
code/libs/deepity/vcproj/deepity.sln
code/libs/deepity/vcproj/deepity.v11.suo
code/libs/deepity/vcproj/deepity_smat.vcxproj
code/libs/deepity/vcproj/deepity_smat.vcxproj.filters
code/libs/deepity/vcproj/deepity_smat.vcxproj.user
code/libs/deepity/vcproj/demo_mnist.nvact
code/libs/deepity/vcproj/UpgradeLog.htm
code/libs/deepity/vcproj/UpgradeLog.XML
code/libs/deepity/vcproj/_UpgradeReport_Files/UpgradeReport.css
code/libs/deepity/vcproj/_UpgradeReport_Files/UpgradeReport.xslt
code/libs/deepity/vcproj/_UpgradeReport_Files/UpgradeReport_Error.png
code/libs/deepity/vcproj/_UpgradeReport_Files/UpgradeReport_Information.png
code/libs/deepity/vcproj/_UpgradeReport_Files/UpgradeReport_Success.png
code/libs/deepity/vc

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