.gitignore
LICENSE.md
abinitio
abinitio\C1
abinitio\C1\LUD
abinitio\C1\LUD\ATA_solver.m
abinitio\C1\LUD\Qtheta.c
abinitio\C1\LUD\Qtheta.mexglx
abinitio\C1\LUD\Qtheta_vsimple.c
abinitio\C1\LUD\SDPLR_prep.m
abinitio\C1\LUD\check_MSE.m
abinitio\C1\LUD\clstack2C.m
abinitio\C1\LUD\construct_S.m
abinitio\C1\LUD\cryoEMADM.m
abinitio\C1\LUD\cryoEMSDPL12N.m
abinitio\C1\LUD\cryoEMSDPL12N_vsimple.m
abinitio\C1\LUD\deterministic_rounding.m
abinitio\C1\LUD\est_orientations_LS.m
abinitio\C1\LUD\est_orientations_LUD.m
abinitio\C1\LUD\makemex.m
abinitio\C1\LUD\randomized_rounding.m
abinitio\C1\LUD\randstiefel.m
abinitio\C1\LUD\test_est_orientations.m
abinitio\C1\cryo_abinitio_C1_LUD.m
abinitio\C1\cryo_abinitio_C1_sync2n.m
abinitio\C1\cryo_abinitio_C1_sync3n.m
abinitio\C1\cryo_abinitio_C1_worker.m
abinitio\C1\sync2n
abinitio\C1\sync2n\cryo_analyze_sync_results.m
abinitio\C1\sync2n\cryo_syncconsistency.m
abinitio\C1\sync2n\cryo_syncmatrix.m
abinitio\C1\sync2n\cryo_syncmatrixIJ_vote.m
abinitio\C1\sync2n\cryo_syncmatrixIJ_vote_old.m
abinitio\C1\sync2n\cryo_syncmatrix_vote.m
abinitio\C1\sync2n\cryo_syncmatrix_vote_old.m
abinitio\C1\sync2n\cryo_syncrotations.m
abinitio\C1\sync2n\cryo_voteIJ.m
abinitio\C1\sync2n\cryo_voteIJ_old.m
abinitio\C1\sync2n\mycross.m
abinitio\C1\sync2n\rotratio.m
abinitio\C1\sync2n\rotratio_eulerangle.m
abinitio\C1\sync2n\rotratio_eulerangle_vec.m
abinitio\C1\sync2n\syncconsistency.m
abinitio\C1\sync2n\test_cryo_syncmatrix_1.m
abinitio\C1\sync2n\test_cryo_syncmatrix_2.m
abinitio\C1\sync2n\test_cryo_syncmatrix_3.m
abinitio\C1\sync2n\test_cryo_syncmatrix_new.m
abinitio\C1\sync3n
abinitio\C1\sync3n\ang2orth.m
abinitio\C1\sync3n\cryo_sync3n_Jsync_power_method.m
abinitio\C1\sync3n\cryo_sync3n_S_to_rot.m
abinitio\C1\sync3n\cryo_sync3n_estimate_Rij.m
abinitio\C1\sync3n\cryo_sync3n_estimate_all_Rijs.m
abinitio\C1\sync3n\cryo_sync3n_estimate_rotations.m
abinitio\C1\sync3n\cryo_sync3n_flip_handedness.m
abinitio\C1\sync3n\cryo_sync3n_syncmatrix.m
abinitio\C1\sync3n\cryo_sync3n_syncmatrix_weights.m
abinitio\C1\sync3n\makemex.m
abinitio\C1\sync3n\pairs_probabilities_mex.c
abinitio\C1\sync3n\signs_times_v_mex.c
abinitio\C1\sync3n\test_cryo_sync3n_1.m
abinitio\C1\sync3n\test_cryo_sync3n_2.m
abinitio\C1\sync3n\test_cryo_sync3n_2nvs3n.m
abinitio\C1\sync3n\test_cryo_sync3n_3.m
abinitio\C1\sync3n\test_cryo_sync3n_4.m
abinitio\C1\sync3n\test_cryo_sync3n_5.m
abinitio\C1\sync3n\triangles_scores.m
abinitio\C1\sync3n\triangles_scores_mex.c
abinitio\C1\sync3n\valid_k_for_ij.m
abinitio\C1\sync3n\vote_k_for_ij.m
abinitio\align
abinitio\align\bf3Dmatchaux.m
abinitio\align\cryo_align_densities.m
abinitio\align\eval3Dmatchaux.m
abinitio\align\genNearRotations.m
abinitio\align\genRotationsGrid.m
abinitio\align\refine3Dmatchaux.m
abinitio\align\test_cryo_align_densities_1.m
abinitio\align\test_cryo_align_densities_2.m
abinitio\align\test_cryo_align_densities_3.m
abinitio\align\test_cryo_align_densities_4.m
basis
basis\assoc_legendre.m
basis\basis_check_evaluate.m
basis\basis_check_expand.m
basis\besselj_newton.m
basis\besselj_zeros.m
basis\dirac_basis.m
basis\fourier_bessel_basis.m
basis\is_basis.m
basis\pad_basis.m
basis\precompute_basis.m
basis\real_sph_harmonic.m
basis\sph_bessel.m
common
common\FSCorr.m
common\GaussFilt.m
common\GetMD5
common\GetMD5\GetMD5.c
common\GetMD5\GetMD5.m