ghmm-0.6.0/tools/Makefile.am
ghmm-0.6.0/tools/Makefile.in
ghmm-0.6.0/tools/ghmm-config.in
ghmm-0.6.0/tools/cluster.c
ghmm-0.6.0/tools/probdist.c
ghmm-0.6.0/tools/scluster.c
ghmm-0.6.0/tools/scoretfbs.c
ghmm-0.6.0/tools/smix_hmm.c
ghmm-0.6.0/tools
ghmm-0.6.0/README
ghmm-0.6.0/AUTHORS
ghmm-0.6.0/COPYING
ghmm-0.6.0/ChangeLog
ghmm-0.6.0/INSTALL
ghmm-0.6.0/Makefile.am
ghmm-0.6.0/Makefile.in
ghmm-0.6.0/NEWS
ghmm-0.6.0/acconfig.h
ghmm-0.6.0/acinclude.m4
ghmm-0.6.0/aclocal.m4
ghmm-0.6.0/config.guess
ghmm-0.6.0/config.h.in
ghmm-0.6.0/config.sub
ghmm-0.6.0/configure
ghmm-0.6.0/configure.in
ghmm-0.6.0/depcomp
ghmm-0.6.0/install-sh
ghmm-0.6.0/ltmain.sh
ghmm-0.6.0/missing
ghmm-0.6.0/mkinstalldirs
ghmm-0.6.0/COPYRIGHT.txt
ghmm-0.6.0/GPL.txt
ghmm-0.6.0/LGPL.txt
ghmm-0.6.0/ToDo
ghmm-0.6.0/win_config.h
ghmm-0.6.0/autogen.sh
ghmm-0.6.0/README.Win
ghmm-0.6.0/ghmm/ghmm.h
ghmm-0.6.0/ghmm/foba.h
ghmm-0.6.0/ghmm/matrix.h
ghmm-0.6.0/ghmm/model.h
ghmm-0.6.0/ghmm/cluster.h
ghmm-0.6.0/ghmm/scluster.h
ghmm-0.6.0/ghmm/root_finder.h
ghmm-0.6.0/ghmm/reestimate.h
ghmm-0.6.0/ghmm/randvar.h
ghmm-0.6.0/ghmm/rng.h
ghmm-0.6.0/ghmm/sequence.h
ghmm-0.6.0/ghmm/vector.h
ghmm-0.6.0/ghmm/viterbi.h
ghmm-0.6.0/ghmm/sfoba.h
ghmm-0.6.0/ghmm/sviterbi.h
ghmm-0.6.0/ghmm/smodel.h
ghmm-0.6.0/ghmm/sdmodel.h
ghmm-0.6.0/ghmm/sdfoba.h
ghmm-0.6.0/ghmm/sreestimate.h
ghmm-0.6.0/ghmm/sgenerate.h
ghmm-0.6.0/ghmm/smixturehmm.h
ghmm-0.6.0/ghmm/const.h
ghmm-0.6.0/ghmm/mes.h
ghmm-0.6.0/ghmm/mprintf.h
ghmm-0.6.0/ghmm/scanner.h
ghmm-0.6.0/ghmm/gauss_tail.h
ghmm-0.6.0/ghmm/smap_classify.h
ghmm-0.6.0/ghmm/Makefile.am
ghmm-0.6.0/ghmm/Makefile.in
ghmm-0.6.0/ghmm/foba.c
ghmm-0.6.0/ghmm/matrix.c
ghmm-0.6.0/ghmm/model.c
ghmm-0.6.0/ghmm/modelutil.c
ghmm-0.6.0/ghmm/modelutil.h
ghmm-0.6.0/ghmm/cluster.c
ghmm-0.6.0/ghmm/scluster.c
ghmm-0.6.0/ghmm/root_finder.c
ghmm-0.6.0/ghmm/reestimate.c
ghmm-0.6.0/ghmm/randvar.c
ghmm-0.6.0/ghmm/rng.c
ghmm-0.6.0/ghmm/sequence.c
ghmm-0.6.0/ghmm/vector.c
ghmm-0.6.0/ghmm/viterbi.c
ghmm-0.6.0/ghmm/sfoba.c
ghmm-0.6.0/ghmm/sviterbi.c
ghmm-0.6.0/ghmm/smodel.c
ghmm-0.6.0/ghmm/sdmodel.c
ghmm-0.6.0/ghmm/sdviterbi.c
ghmm-0.6.0/ghmm/sdfoba.c
ghmm-0.6.0/ghmm/sreestimate.c
ghmm-0.6.0/ghmm/sgenerate.c
ghmm-0.6.0/ghmm/smixturehmm.c
ghmm-0.6.0/ghmm/mes.c
ghmm-0.6.0/ghmm/mprintf.c
ghmm-0.6.0/ghmm/scanner.c
ghmm-0.6.0/ghmm/gauss_tail.c
ghmm-0.6.0/ghmm/smap_classify.c
ghmm-0.6.0/ghmm/PHI_001_20.dat
ghmm-0.6.0/ghmm
ghmm-0.6.0/ghmmwrapper/ghmm.py
ghmm-0.6.0/ghmmwrapper/ghmmhelper.py
ghmm-0.6.0/ghmmwrapper/xmlutil.py
ghmm-0.6.0/ghmmwrapper/ghmmwrapper.i
ghmm-0.6.0/ghmmwrapper/setup.py
ghmm-0.6.0/ghmmwrapper/sdclass_change.c
ghmm-0.6.0/ghmmwrapper/sdclass_change.h
ghmm-0.6.0/ghmmwrapper/read_cxml.c
ghmm-0.6.0/ghmmwrapper/read_cxml.h
ghmm-0.6.0/ghmmwrapper/gql.c
ghmm-0.6.0/ghmmwrapper/mixture.py
ghmm-0.6.0/ghmmwrapper/test100.sqd
ghmm-0.6.0/ghmmwrapper/test2.smo
ghmm-0.6.0/ghmmwrapper/modhmmer.py
ghmm-0.6.0/ghmmwrapper/DataStructures.py
ghmm-0.6.0/ghmmwrapper/Graph.py
ghmm-0.6.0/ghmmwrapper/GraphUtil.py
ghmm-0.6.0/ghmmwrapper/GatoGlobals.py
ghmm-0.6.0/ghmmwrapper/EditObjectAttributesDialog.py
ghmm-0.6.0/ghmmwrapper/Makefile.am
ghmm-0.6.0/ghmmwrapper
ghmm-0.6.0/tests/Makefile.am
ghmm-0.6.0/tests/Makefile.in
ghmm-0.6.0/tests/chmm.c
ghmm-0.6.0/tests/coin_toss_test.c
ghmm-0.6.0/tests/generate_PHI.c
ghmm-0.6.0/tests/root_finder_test.c
ghmm-0.6.0/tests/sequences_old_format.c
ghmm-0.6.0/tests/sequences_test.c
ghmm-0.6.0/tests/shmm_viterbi_test.c
ghmm-0.6.0/tests/test_gsl_ran_gaussian_tail.c
ghmm-0.6.0/tests/two_states_three_symbols.c
ghmm-0.6.0/tests/data/Makefile.am
ghmm-0.6.0/tests/data/Makefile.in
ghmm-0.6.0/tests/data/test.smo
ghmm-0.6.0/tests/data/test10.sqd
ghmm-0.6.0/tests/data/test100.sqd
ghmm-0.6.0/tests/data/viterbi.sh
ghmm-0.6.0/tests/data
ghmm-0.6.0/tests/ghmm.tests/first-try.exp
ghmm-0.6.0/tests/ghmm.tests
ghmm-0.6.0/tests/lib/ghmm.exp
ghmm-0.6.0/tests/lib
ghmm-0.6.0/tests/config/default.exp
ghmm-0.6.0/tests/config
ghmm-0.6.0/tests
ghmm-0.6.0/ghmm++/begin_code.h
ghmm-0.6.0/ghmm++/close_code.h
ghmm-0.6.0/ghmm++/GHMM_DiscreteModel.h
ghmm-0.6.0/ghmm++/GHMM_ContinuousModel.h
ghmm-0.6.0/ghmm++/GHMM_AbstractModel.h
ghmm-0.6.0/ghmm++/GHMM_State.h
ghmm-0.6.0/ghmm++/GHMM_Sequence.h
ghmm-0.6.0/ghmm++/GHMM_Sequences.h
ghmm-0.6.0/ghmm++/GHMM_Document.h
ghmm-0.6.0/ghmm++/GHMM_Transition.h
ghmm-0.6.0/ghmm++/GHMM_Emission.h
ghmm-0.6.0/ghmm++/GHMM_Types.h
ghmm-0.6.0/ghmm++/GHMM_IntVector.h
ghmm-0.6.0/ghmm++/GHMM_DoubleVector.h
ghmm-0.6.0/ghmm++/GHMM_DoubleMatrix.h
ghmm-0.6.0/ghmm++/GHMM_IntMatrix.h
ghmm-0.6.0/ghmm++/GHMM_Toolkit.h
ghmm-0.6.0/ghmm++/GHMM_Alphabet.h
ghmm-0.6.0/ghmm++/GHMM.h
ghmm-0.6.0/ghmm++/GHMM_GMLDoc.h
ghmm-0.6.0/ghmm++/GHMM_convertXMLtoC.h
ghmm-0.6.0/ghmm++/GHMM_GMLDataNode.h
ghmm-0.6.0/ghmm++/GHMM_GMLDiscreteModel.h
ghmm-0.6.0/ghmm++/GHMM_GMLContinuousModel.h
ghmm-0.6.0/ghmm++/GHMM_GMLTransition.h
ghmm-0.6.0/ghmm++/GHMM_GMLAlphabet.h
ghmm-0.6.0/ghmm++/GHMM_GMLClass.h
ghmm-0.6.0/ghmm++/GHMM_GMLEmission.h
ghmm-0.6.0/ghmm++/GHMM_StateT.hh
ghmm-0.6.0/ghmm++/GHMM_AbstractModelT.hh
ghmm-0.6.0/ghmm++/GHMM_DiscreteModelT.hh
ghmm-0.6.0/ghmm++/GHMM_SWDiscreteModel.h
ghmm-0.6.0/ghmm++/GHMM_Co