MSCluster.exe
Models/All_PTMs.txt
Models/CID_IT_TRYP.txt
Models/CID_IT_TRYP_break_score.txt
Models/CID_IT_TRYP_config.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_0_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_0_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_0_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_1_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_1_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_1_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_2_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_2_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_1_2_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_0_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_0_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_0_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_1_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_1_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_1_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_2_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_2_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_2_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_3_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_3_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_3_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_4_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_4_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_4_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_5_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_5_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_2_5_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_0_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_0_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_0_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_1_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_1_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_1_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_2_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_2_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_2_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_3_0.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_3_1.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_3_3_2.txt
Models/CID_IT_TRYP_EDGE/CID_IT_TRYP_edge_model.txt
Models/CID_IT_TRYP_EDGE
Models/CID_IT_TRYP_fragments.txt
Models/CID_IT_TRYP_fragment_sets.txt
Models/CID_IT_TRYP_PMCR.txt
Models/CID_IT_TRYP_SQS.txt
Models/LTQ_COMP/IT_TRYP_end_freq_1.txt
Models/LTQ_COMP/IT_TRYP_end_freq_2.txt
Models/LTQ_COMP/IT_TRYP_end_freq_3.txt
Models/LTQ_COMP/IT_TRYP_mid_freq_1.txt
Models/LTQ_COMP/IT_TRYP_mid_freq_2.txt
Models/LTQ_COMP/IT_TRYP_mid_freq_3.txt
Models/LTQ_COMP/IT_TRYP_start_freq_1.txt
Models/LTQ_COMP/IT_TRYP_start_freq_2.txt
Models/LTQ_COMP/IT_TRYP_start_freq_3.txt
Models/LTQ_COMP
Models/PepNovo_PTMs.txt
Models
src/AdvancedScoreModel.cpp
src/AdvancedScoreModel.h
src/AdvancedScoreModel_fill.cpp
src/AdvancedScoreModel_frag.cpp
src/AdvancedScoreModel_regional.cpp
src/AnnotatedSpectrum.h
src/AnnotatedSpecturm.cpp
src/auxfun.cpp
src/auxfun.h
src/base64.cpp
src/base64.h
src/BasicDataStructs.cpp
src/BasicDataStructs.h
src/cluster_main.cpp
src/Config.cpp
src/Config.h
src/ConversionTables.cpp
src/ConversionTables.h
src/DeNovoDp.cpp
src/DeNovoDp.h
src/DeNovoPartModel.cpp
src/DeNovoRankModel.h
src/DeNovoRankScore.cpp
src/DeNovoRankScore.h
src/DeNovoRankTrain.cpp
src/DeNovoSolutions.cpp
src/DeNovoSolutions.h
src/DiscretePeakModel.cpp
src/DiscretePeakModel.h
src/EdgeModel.cpp
src/EdgeModel.h
src/FileManagement.cpp
src/FileManagement.h
src/Fragmentation.cpp
src/Fragmentation.h
src/FragmentSelection.cpp
src/FragmentSelection.h
src/FragProbTable.cpp
src/FragProbTable.h
src/Homeomorphic.cpp
src/includes.h
src/Isotopes.cpp
src/Isotopes.h
src/Makefile
src/MassRangeMap.cpp
src/ME_REG.cpp
src/ME_REG.h
src/ME_Regression_DataSet.cpp
src/ME_Regression_Model.cpp
src/Model.cpp
src/Model.h
src/MultiPath.cpp
src/MZXML_parsing.cpp
src/PartitionModel.cpp
src/PeakRankModel.cpp
src/PeakRankModel.h
src/PeakRankPartialDenovo.cpp
src/PeakRank_advanced.cpp
src/PeakRank_combined.cpp
src/PeakRank_combined_dnv.cpp
src/PeakRank_simple.cpp
src/PeptideComp.cpp
src/PeptideComp.h
src/PMCSQS.cpp
src/PMCSQS.h
src/PMCSQS_model.cpp
src/PMC_rank.cpp
src/prepare_ScoreTrain_run.pl
src/PrmGraph.cpp
src/PrmGraph.h
src/PTM_stuff.cpp
src/QCBasicSpecReader.cpp
src/QCDAT.cpp
src/QCDotProdSim.cpp
src/QCoutputter.cpp
src/QCStatics.cpp
src/QuickClustering.cpp
src/QuickClustering.h
src/QuickClusteringSpectra.cpp
src/RankBoost.cpp
src/RankBoost.h
src/RankBoostSample.cpp
src/RegionalPepNovoModel.cpp
src/RegionalPepNovoModel.h
src/RegularRankModel.cpp
src/RegularRankModel.h
src/ReScoreDB.cpp
src/run_ScoreTrain_on_grid.pl
src/SiteParseRun.cpp
src/Spectrum.cpp
src/Spectrum.h
src
copyright.txt
www.dssz.com.txt