probaligngui_beta_1.3/
probaligngui_beta_1.3/install.sh
probaligngui_beta_1.3/javagui/
probaligngui_beta_1.3/javagui/classes/
probaligngui_beta_1.3/javagui/classes/probalign/
probaligngui_beta_1.3/javagui/src/
probaligngui_beta_1.3/javagui/src/FileOpen.java
probaligngui_beta_1.3/javagui/src/FileSaveAs.java
probaligngui_beta_1.3/javagui/src/SwingWorker.java
probaligngui_beta_1.3/javagui/src/Frame1_AboutBox.java
probaligngui_beta_1.3/javagui/src/gui.java
probaligngui_beta_1.3/javagui/src/Frame1.java
probaligngui_beta_1.3/javagui/src/ProbabilityFrame.java
probaligngui_beta_1.3/javagui/src/AlignmentChooser.java
probaligngui_beta_1.3/javagui/src/reminder.java
probaligngui_beta_1.3/javagui/images/
probaligngui_beta_1.3/javagui/images/about.png
probaligngui_beta_1.3/javagui/images/a.gif
probaligngui_beta_1.3/javagui/lib/
probaligngui_beta_1.3/javagui/lib/itext-1.4.6.jar
probaligngui_beta_1.3/javagui/tempfiles/
probaligngui_beta_1.3/probalign/
probaligngui_beta_1.3/probalign/bin/
probaligngui_beta_1.3/probalign/README
probaligngui_beta_1.3/probalign/RELEASE_NOTES
probaligngui_beta_1.3/probalign/src/
probaligngui_beta_1.3/probalign/src/ComputeAlignment.cc
probaligngui_beta_1.3/probalign/src/EvolutionaryTree.h
probaligngui_beta_1.3/probalign/src/FileBuffer.h
probaligngui_beta_1.3/probalign/src/Main.cc
probaligngui_beta_1.3/probalign/src/Makefile
probaligngui_beta_1.3/probalign/src/Matrix.h
probaligngui_beta_1.3/probalign/src/MultiSequence.h
probaligngui_beta_1.3/probalign/src/PostProbs.cc
probaligngui_beta_1.3/probalign/src/ReadMatrix.cc
probaligngui_beta_1.3/probalign/src/SafeVector.h
probaligngui_beta_1.3/probalign/src/Sequence.h
probaligngui_beta_1.3/probalign/src/SparseMatrix.h
probaligngui_beta_1.3/README
probaligngui_beta_1.3/run.sh