Dev/
Dev/make/
Dev/make/process_Gram.make
Dev/make/substitute.make
Dev/make/train_SVM.make
Dev/make/eval_SVM.make
Dev/make/process_seq.make
Dev/make/shuffle_seq.make
Dev/make/process_seq_Regis.make
Dev/make/compute_stats.make
Dev/make/process_alignments.make
Dev/make/tune_kernel.make
Dev/Alpha/
Dev/Alpha/Struct/
Dev/Alpha/Struct/struct.alpha
Dev/Alpha/Struct/struct.alpha.init
Dev/Alpha/Helices/
Dev/Alpha/Helices/helices.alpha
Dev/Alpha/Helices/helices.alpha.init
Dev/Data/
Dev/Data/Struct/
Dev/Data/Struct/CV/
Dev/Data/Struct/CV/struct.all
Dev/Data/Struct/CV/struct.app
Dev/Data/Struct/CV/struct.test
Dev/Data/Struct/CV/yann1096new2.dataset
Dev/Data/Struct/CV/struct.theta
Dev/Data/Struct/Output/
Dev/Data/Struct/Output/struct.output
Dev/Data/Struct/Theta/
Dev/Data/Helices/
Dev/Data/Helices/Theta/
Dev/Data/Helices/Theta/window_15
Dev/Data/Helices/CV/
Dev/Data/Helices/CV/Testing1.vec
Dev/Data/Helices/CV/Testing2.vec
Dev/Data/Helices/CV/Testing3.vec
Dev/Data/Helices/CV/Testing4.vec
Dev/Data/Helices/CV/Testing5.vec
Dev/Data/Helices/CV/Testing6.vec
Dev/Data/Helices/CV/Testing7.vec
Dev/Data/Helices/CV/Training1.vec
Dev/Data/Helices/CV/Training2.vec
Dev/Data/Helices/CV/Training3.vec
Dev/Data/Helices/CV/Training4.vec
Dev/Data/Helices/CV/Training5.vec
Dev/Data/Helices/CV/Training6.vec
Dev/Data/Helices/CV/Training7.vec
Dev/Data/Helices/Output/
Dev/Data/Helices/Output/helices.output
Dev/Fichcom/
Dev/Fichcom/substitute.com
Dev/Fichcom/train_SVM.com
Dev/Fichcom/process_Gram.com
Dev/Fichcom/tune_kernel.com
Dev/Fichcom/eval_SVM.com
Dev/Fichcom/compute_stats.com
Dev/Fichcom/process_seq.com
Dev/Fichcom/substitute.com.struct
Dev/Fichcom/process_seq.com.struct
Dev/Fichcom/process_Gram.com.SOPMA
Dev/Fichcom/eval_SVM.com.struct
Dev/Fichcom/compute_stats.com.struct
Dev/Fichcom/tune_kernel.com.struct
Dev/Fichcom/process_Gram.com.BATMAS30
Dev/Fichcom/train_SVM.com.helices
Dev/Fichcom/tune_kernel.com.helices
Dev/Fichcom/train_SVM.com.struct
Dev/Fichcom/eval_SVM.com.helices
Dev/Fichcom/process_Gram.com.PHAT
Dev/SV/
Dev/SV/Helices/
Dev/SV/Helices/helices.sv
Dev/SV/Struct/
Dev/SV/Struct/struct.sv
Dev/LP/
Dev/LP/lp_solve_3.2/
Dev/LP/lp_solve_3.2/CHANGELOG
Dev/LP/lp_solve_3.2/HARTMUT_DOCUMENTATION
Dev/LP/lp_solve_3.2/LGPL.txt
Dev/LP/lp_solve_3.2/LICENSE
Dev/LP/lp_solve_3.2/MANIFEST
Dev/LP/lp_solve_3.2/MIPLIB_RESULTS
Dev/LP/lp_solve_3.2/MPS.description
Dev/LP/lp_solve_3.2/Makefile
Dev/LP/lp_solve_3.2/Makefile.linux
Dev/LP/lp_solve_3.2/NETLIB_RESULTS
Dev/LP/lp_solve_3.2/README
Dev/LP/lp_solve_3.2/debug.c
Dev/LP/lp_solve_3.2/debug.h
Dev/LP/lp_solve_3.2/demo.o
Dev/LP/lp_solve_3.2/lpkit.o
Dev/LP/lp_solve_3.2/demo.c
Dev/LP/lp_solve_3.2/read.o
Dev/LP/lp_solve_3.2/hash.c
Dev/LP/lp_solve_3.2/hash.h
Dev/LP/lp_solve_3.2/hash.o
Dev/LP/lp_solve_3.2/lex.c
Dev/LP/lp_solve_3.2/lex.l
Dev/LP/lp_solve_3.2/liblpk.a
Dev/LP/lp_solve_3.2/lp.c
Dev/LP/lp_solve_3.2/lp.o
Dev/LP/lp_solve_3.2/lp.y
Dev/LP/lp_solve_3.2/lp2mps
Dev/LP/lp_solve_3.2/lp2mps.c
Dev/LP/lp_solve_3.2/solve.o
Dev/LP/lp_solve_3.2/lp_solve
Dev/LP/lp_solve_3.2/lp_solve.1
Dev/LP/lp_solve_3.2/lp_solve.c
Dev/LP/lp_solve_3.2/lp_solve.man
Dev/LP/lp_solve_3.2/debug.o
Dev/LP/lp_solve_3.2/lpglob.h
Dev/LP/lp_solve_3.2/lpkit.c
Dev/LP/lp_solve_3.2/lpkit.h
Dev/LP/lp_solve_3.2/readmps.o
Dev/LP/lp_solve_3.2/mps2lp
Dev/LP/lp_solve_3.2/mps2lp.c
Dev/LP/lp_solve_3.2/presolve.o
Dev/LP/lp_solve_3.2/patchlevel.h
Dev/LP/lp_solve_3.2/presolve.c
Dev/LP/lp_solve_3.2/demo
Dev/LP/lp_solve_3.2/read.c
Dev/LP/lp_solve_3.2/read.h
Dev/LP/lp_solve_3.2/readmps.c
Dev/LP/lp_solve_3.2/lp_solve.o
Dev/LP/lp_solve_3.2/solve.c
Dev/LP/lp_solve_3.2/lp2mps.o
Dev/LP/lp_solve_3.2/test.lp
Dev/LP/lp_solve_3.2/test.mps
Dev/LP/lp_solve_3.2/mps2lp.o
Dev/LP/lp_solve_3.2.tar
Dev/Doc/
Dev/Doc/users_guide.pdf
Dev/Tech/
Dev/Tech/technical_doc.pdf
Dev/Save_alpha/
Dev/Save_alpha/Struct/
Dev/Save_alpha/Struct/struct.alpha
Dev/Save_alpha/Helices/
Dev/Save_alpha/Helices/helices.alpha
Dev/Feasible/
Dev/Feasible/Helices/
Dev/Feasible/Helices/helices.alpha
Dev/Feasible/Struct/
Dev/Feasible/Struct/struct_15.alpha.ref
Dev/Feasible/Struct/struct.alpha
Dev/process_seq.o
Dev/algebre.o
Dev/Theta/
Dev/Theta/Struct/
Dev/Theta/Struct/struct.theta
Dev/Theta/Struct/struct.theta.init
Dev/Theta/Struct/weights.gp
Dev/Theta/Struct/weights.ps
Dev/Theta/Struct/weights.txt
Dev/Theta/Helices/
Dev/Theta/Helices/window_15.BATMAS30
Dev/Theta/Helices/window_15.init
Dev/Theta/Helices/window_15.SOPMA
Dev/Theta/Helices/window_15.PHAT
Dev/D/
Dev/D/BATMAS30.mat
Dev/D/PHAT.mat
Dev/D/SOPMA.mat
Dev/D/SOPMA.eigen
Dev/D/SOPMA.dp
Dev/D/SOPMA.dist
Dev/D/BATMAS30.eigen
Dev/D/BATMAS30.dp
Dev/D/BATMAS30.dist
Dev/D/PHAT.eigen
Dev/D/PHAT.dp
Dev/D/PHAT.dist
Dev/train_SVM
Dev/Rand0.c
Dev/compile_tune_kernel
Dev/README
Dev/initialize
Dev/Rand0.o
Dev/compile_process_seq
Dev/substitute
Dev/execute_process_Gram
Dev/process_seq
Dev/eval_SVM
Dev/substitute.o
Dev/process_Gram.o
Dev/process_Gram
Dev/compute_stats.c
Dev/compute_stats
Dev/substitute.c
Dev/compute_stats.o
Dev/compile_process_Gram
Dev/nettoie
Dev/execute_process_seq
Dev/biblio.c
Dev/biblio.h
Dev/compile_eval_SVM
Dev/compile_train_SVM
Dev/eval_SVM.c
Dev/execute_train_SV